Genesis & History

From a state investment, to a clinical reality.

UCGD was launched in 2014 with three founding charges from the State of Utah and the University of Utah — and built into a center that now spans algorithms, infrastructure, services, and patient care.

Two arms. One center.

UCGD operates as both an academic research initiative — six PI laboratories advancing primary science — and as a fee-for-service Core Facility that puts our tools and expertise into the hands of every investigator at the University of Utah.
01 · Academic Initiative

The Six PI labs.

FOUNDED 2014

The research engine of UCGD. Six principal-investigator laboratories that drive primary discovery in human genetics, mosaicism, oncology, evolutionary biology, and clinical genomics — and author the open- source software the field runs on.

02 · Core Facility

The UCGD Core.

LAUNCHED 2017 · CORE-DESIGNATED 2018

A fee-for-service internal "spinout" of the academic initiative, administered through HSC Cores. Makes UCGD's bioinformatics resources and expertise available to any University of Utah investigator — and provides the cost-recovery mechanism that funds infrastructure for everyone.

Variant calling at every scale — exome to whole genome

Disease-gene discovery in cohorts and families

Long- and short-read alignment, joint genotyping

Structural variant calling, methylation, RNA-seq

Microbial assembly & metagenomics

Project & data management through Mosaic

Contributions to the field.

Our investigators helped build the foundations of modern genomics — from the sequencing of the first human genome to the variant callers, file formats, and annotation pipelines that today’s clinical and research labs depend on.

Seminal Publications

The Sequence of the Human Genome Founding
1000 Genomes Project landmark papers Population
First Nanopore human genome Long-read
Genetic architecture of Autism Spectrum Disorder Disease

Tools & Community Standards

BEDTools Top-cited
FreeBayes variant caller Ubiquitous
SAM/BAM & VCF formats Standard
MAKER genome annotation SOTA
GEM clinical prioritization Commercial
Taxonomer infectious disease Commercial

Consortium Contributions

Human Genome Project Founding
The SNP Consortium Founding
1000 Genomes Project Active
SMaHT Network Active
GREGoR Active
Undiagnosed Diseases Network † Active
Pangenome Consortium Active

† The Undiagnosed Diseases Network is listed here as a consortium membership — not as a UCGD project. UCGD investigators participate in the UDN; the network itself is led nationally.

Outcomes the institution carries.

High-value initiatives that grew out of earlier UCGD project support — and now serve the University of Utah as durable, named platforms.

Institutional
Platforms born here, used everywhere

EHR-enabled disease research
Clinical Research

EHR-enabled disease research

Integration of University of Utah Hospitals electronic-health-record data into disease research — surfacing phenotypic signals at population scale.

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Mosaic patient data system
Data Platform

Mosaic patient data system

Collaborative development with Frameshift Genomics for genomic patient data management, sharing, and project administration. The UCGD Core’s primary data interface.

About Mosaic
Precision oncology platform
Clinical Platform

Precision oncology platform

Joint School of Medicine + Huntsman Cancer Institute funding supported a functional drug- screening platform now in use for advanced/metastatic breast cancer and being extended for pediatric brain cancer.

Get more info
Long-read sequencing at U of U
Technology

Long-read sequencing at U of U

Technology integration and application across UCGD — enabling the resolution of complex and segmentally duplicated regions inaccessible to short-read sequencing.

About the project

Who funds this work.

UCGD was launched in 2014 with a joint investment by USTAR (Utah Science Technology and Research Initiative) and the University of Utah Health Sciences Center. Our research programs receive ongoing support from federal funding agencies and private foundations.

Projects
Selected initiatives

National Institute of General Medical Sciences  NIGMS

NIGMS supports basic research that increases understanding of biological processes and lays the foundation for advances in disease diagnosis, treatment, and prevention.

NIH · Federal

National Center for Advancing Translational Sciences NCATS

NCATS aims to accelerate the process of turning biomedical discoveries into real-world applications — diagnostics, treatments, and cures.

NIH · Federal

American Heart Association  AHA

Through longstanding support of scientific research, the AHA has propelled breakthroughs that have saved and improved lives — with a commitment to funding early-career investigators.

Foundation

National Institute of Diabetes & Digestive and Kidney Diseases NIDDK

NIDDK research creates knowledge about and treatments for some of the most chronic, costly, and consequential diseases for patients and their families.

NIH · Federal

Eunice Kennedy Shriver National Institute of Child Health and Human Development NICHD

NICHD's mission is to lead research and training to understand human development, improve reproductive health, enhance the lives of children and adolescents, and optimize abilities for all.

NIH · Federal

Chan Zuckerberg Initiative  CZI

Founded in 2015 to help solve some of society's toughest challenges — from eradicating disease and improving education to addressing the needs of local communities.

Foundation

Centers for Disease Control and Prevention  CDC

Detecting and responding to new and emerging health threats, putting science and advanced technology into action to prevent disease, and training the public health workforce.

Federal

National Cancer Institute  NCI

Supports UCGD through the Informatics Technologies for Cancer Research Program — funding software tools and methods that track the clonal evolution of tumors.

NIH · Federal

University of Utah Health Sciences

The largest academic medical center in the Intermountain West — providing care for the people of Utah, Idaho, Wyoming, Montana, and much of Nevada, while serving as Utah's premier research and teaching university.

Institutional · Founding partner

Margolis Foundation

Generously supports the research mission of University of Utah Health Sciences — including projects in diabetes, cardiovascular disease, brain disorders, inflammatory conditions, and inherited genetic diseases.

Foundation

National Human Genome Research Institute  NHGRI

Began as the National Center for Human Genome Research, established in 1989 to carry out the role of the NIH in the International Human Genome Project — and continues to fund the field's most ambitious efforts.

NIH · Federal

Simons Foundation Autism Research Initiative  SFARI

SFARI's mission is to improve the understanding, diagnosis, and treatment of autism spectrum disorders by funding innovative research of the highest quality and relevance.

Foundation

National Science Foundation  NSF

An independent federal agency created by Congress in 1950 to promote the progress of science, advance the national health, prosperity, and welfare, and secure the national defense.

Federal

National Heart, Lung, and Blood Institute  NHLBI

Provides global leadership for a research, training, and education program to promote the prevention and treatment of heart, lung, and blood diseases — and enhance the health of all individuals.

NIH · Federal

USTAR — Utah Science Technology and Research Initiative

The state of Utah's investment vehicle for growing the technology and life-sciences economy — which co-founded UCGD in 2014 alongside U of U Health Sciences.

State · Founding partner

Huntsman Cancer Institute

Joint funding with the U of U School of Medicine has supported the precision oncology platform — extending functional drug- screening from advanced breast cancer into pediatric brain cancer.

Institutional partner

UCGD also receives ongoing support through individual grants, training awards, and consortia not listed here. Funders, foundations, and institutional partners interested in supporting our work are invited to get in touch.

Where to next

Discovery, infrastructure, and translation — under one roof.

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Talk with us

Questions about a role, a graduate program rotation, or a partnership idea — we'd rather hear from you than miss you.